Fix two-phase discovery documentation and scripts

- Add mcp_config.example.json for Claude Code MCP configuration
- Fix MCP bridge path in example config (../../proxysql_mcp_stdio_bridge.py)
- Update Two_Phase_Discovery_Implementation.md with correct Phase 1/Phase 2 usage
- Fix Two_Phase_Discovery_Implementation.md DELETE FROM fts_objects to scope to run_id
- Update README.md with two-phase discovery section and multi-agent legacy note
- Create static_harvest.sh bash wrapper for Phase 1
- Create two_phase_discovery.py orchestration script with prompts
- Add --run-id parameter to skip auto-fetch
- Fix RUN_ID placeholder mismatch (<USE_THE_PROVIDED_RUN_ID>)
- Fix catalog path default to mcp_catalog.db
- Add test_catalog.sh to verify catalog tools work
- Fix Discovery_Schema.cpp FTS5 syntax (missing space)
- Remove invalid CREATE INDEX on FTS virtual tables
- Add MCP tool call logging to track tool usage
- Fix Static_Harvester::get_harvest_stats() to accept run_id parameter
- Fix DELETE FROM fts_objects to only delete for specific run_id
- Update system prompts to say DO NOT call discovery.run_static
- Update user prompts to say Phase 1 is already complete
- Add --mcp-only flag to restrict Claude Code to MCP tools only
- Make FTS table failures non-fatal (check if table exists first)
- Add comprehensive documentation for both discovery approaches
pull/5318/head
Rene Cannao 3 months ago
parent f9270e6c8b
commit 1b7335acfe

@ -148,21 +148,64 @@ The LLM agent (via Claude Code) performs semantic analysis using 18+ MCP tools:
## Usage
### Starting Discovery
The two-phase discovery provides two ways to discover your database schema:
### Phase 1: Static Harvest (Direct curl)
Phase 1 is a simple HTTP POST to trigger deterministic metadata extraction. No Claude Code required.
```bash
# Option A: Using the convenience script (recommended)
cd scripts/mcp/DiscoveryAgent/ClaudeCode_Headless/
./static_harvest.sh --schema sales --notes "Production sales database discovery"
# Option B: Using curl directly
curl -k -X POST https://localhost:6071/mcp/query \
-H "Content-Type: application/json" \
-d '{
"jsonrpc": "2.0",
"id": 1,
"method": "tools/call",
"params": {
"name": "discovery.run_static",
"arguments": {
"schema_filter": "sales",
"notes": "Production sales database discovery"
}
}
}'
# Returns: { run_id: 1, started_at: "...", objects_count: 45, columns_count: 380 }
```
### Phase 2: LLM Agent Discovery (via two_phase_discovery.py)
Phase 2 uses Claude Code for semantic analysis. Requires MCP configuration.
```bash
# Using the orchestration script
# Step 1: Copy example MCP config and customize
cp scripts/mcp/DiscoveryAgent/ClaudeCode_Headless/mcp_config.example.json mcp_config.json
# Edit mcp_config.json to set your PROXYSQL_MCP_ENDPOINT if needed
# Step 2: Run the two-phase discovery
./scripts/mcp/DiscoveryAgent/ClaudeCode_Headless/two_phase_discovery.py \
--mcp-config mcp_config.json \
--schema sales \
--model claude-3.5-sonnet
# Dry-run mode (preview without executing)
./scripts/mcp/DiscoveryAgent/ClaudeCode_Headless/two_phase_discovery.py \
--mcp-config mcp_config.json \
--schema test \
--dry-run
```
### Direct MCP Tool Calls (via /mcp/query endpoint)
You can also call discovery tools directly via the MCP endpoint:
```bash
# All discovery tools are available via /mcp/query endpoint
curl -X POST https://localhost:6071/mcp/query \
curl -k -X POST https://localhost:6071/mcp/query \
-H "Content-Type: application/json" \
-d '{
"jsonrpc": "2.0",
@ -179,7 +222,8 @@ curl -X POST https://localhost:6071/mcp/query \
# Returns: { run_id: 1, started_at: "...", objects_count: 45, columns_count: 380 }
# Phase 2: LLM agent discovery
curl -X POST https://localhost:6071/mcp/query \
curl -k -X POST https://localhost:6071/mcp/query \
-H "Content-Type: application/json" \
-d '{
"jsonrpc": "2.0",
"id": 2,
@ -265,11 +309,16 @@ grep -n "discovery.run_static" lib/Query_Tool_Handler.cpp
grep -n "agent.run_start" lib/Query_Tool_Handler.cpp
grep -n "llm.summary_upsert" lib/Query_Tool_Handler.cpp
# Test the discovery script (dry-run mode)
./scripts/mcp/DiscoveryAgent/ClaudeCode_Headless/two_phase_discovery.py \
--dry-run \
--mcp-config mcp_config.json \
--schema test
# Test Phase 1 (curl)
curl -k -X POST https://localhost:6071/mcp/query \
-H "Content-Type: application/json" \
-d '{"jsonrpc":"2.0","id":1,"method":"tools/call","params":{"name":"discovery.run_static","arguments":{"schema_filter":"test"}}}'
# Should return: { run_id: 1, objects_count: X, columns_count: Y }
# Test Phase 2 (two_phase_discovery.py)
cd scripts/mcp/DiscoveryAgent/ClaudeCode_Headless/
cp mcp_config.example.json mcp_config.json
./two_phase_discovery.py --dry-run --mcp-config mcp_config.json --schema test
```
## Next Steps

@ -268,6 +268,16 @@ public:
*/
std::string get_harvest_stats();
/**
* @brief Get harvest statistics for a specific run
*
* Returns counts of harvested objects for the specified run_id.
*
* @param run_id The run ID to get stats for
* @return JSON string with statistics
*/
std::string get_harvest_stats(int run_id);
// ========== Data Structures for Query Results ==========
/**

@ -430,26 +430,28 @@ int Discovery_Schema::create_llm_tables() {
int Discovery_Schema::create_fts_tables() {
// FTS over objects (contentless)
db->execute(
"CREATE VIRTUAL TABLE IF NOT EXISTS fts_objects"
"USING fts5("
if (!db->execute(
"CREATE VIRTUAL TABLE IF NOT EXISTS fts_objects USING fts5("
" object_key, schema_name, object_name, object_type, comment, columns_blob, definition_sql, tags,"
" content='',"
" tokenize='unicode61 remove_diacritics 2'"
");"
);
db->execute("CREATE INDEX IF NOT EXISTS idx_fts_objects_key ON fts_objects(object_key);");
)) {
proxy_error("Failed to create fts_objects FTS5 table - FTS5 may not be enabled\n");
return -1;
}
// FTS over LLM artifacts
db->execute(
"CREATE VIRTUAL TABLE IF NOT EXISTS fts_llm"
"USING fts5("
if (!db->execute(
"CREATE VIRTUAL TABLE IF NOT EXISTS fts_llm USING fts5("
" kind, key, title, body, tags,"
" content='',"
" tokenize='unicode61 remove_diacritics 2'"
");"
);
)) {
proxy_error("Failed to create fts_llm FTS5 table - FTS5 may not be enabled\n");
return -1;
}
return 0;
}
@ -866,14 +868,35 @@ int Discovery_Schema::upsert_profile(
}
int Discovery_Schema::rebuild_fts_index(int run_id) {
// Clear existing FTS index
db->execute("DELETE FROM fts_objects;");
// Fetch all objects for the run
// Check if FTS table exists first
char* error = NULL;
int cols = 0, affected = 0;
SQLite3_result* resultset = NULL;
db->execute_statement(
"SELECT name FROM sqlite_master WHERE type='table' AND name='fts_objects';",
&error, &cols, &affected, &resultset
);
bool fts_exists = (resultset && !resultset->rows.empty());
if (resultset) delete resultset;
if (!fts_exists) {
proxy_warning("FTS table fts_objects does not exist - skipping FTS rebuild\n");
return 0; // Non-fatal - harvest can continue without FTS
}
// Clear existing FTS index for this run only
std::ostringstream delete_sql;
delete_sql << "DELETE FROM fts_objects WHERE object_key IN ("
<< "SELECT schema_name || '.' || object_name FROM objects WHERE run_id = " << run_id
<< ");";
if (!db->execute(delete_sql.str().c_str())) {
proxy_warning("Failed to clear FTS index (non-critical)\n");
return 0; // Non-fatal
}
// Fetch all objects for the run
std::ostringstream sql;
sql << "SELECT object_id, schema_name, object_name, object_type, object_comment, definition_sql "
<< "FROM objects WHERE run_id = " << run_id << ";";

@ -339,6 +339,7 @@ json MCP_JSONRPC_Resource::handle_tools_call(const json& req_json) {
std::string tool_name = req_json["params"]["name"].get<std::string>();
json arguments = req_json["params"].contains("arguments") ? req_json["params"]["arguments"] : json::object();
proxy_info("MCP TOOL CALL: endpoint='%s' tool='%s'\n", endpoint_name.c_str(), tool_name.c_str());
proxy_debug(PROXY_DEBUG_GENERIC, 2, "MCP tool call: %s with args: %s\n", tool_name.c_str(), arguments.dump().c_str());
json response = tool_handler->execute_tool(tool_name, arguments);

@ -82,7 +82,7 @@ ProxySQL_MCP_Server::ProxySQL_MCP_Server(int p, MCP_Threads_Handler* h)
handler->variables.mcp_mysql_user ? handler->variables.mcp_mysql_user : "",
handler->variables.mcp_mysql_password ? handler->variables.mcp_mysql_password : "",
handler->variables.mcp_mysql_schema ? handler->variables.mcp_mysql_schema : "",
handler->variables.mcp_catalog_path ? handler->variables.mcp_catalog_path : "/var/lib/proxysql/discovery_catalog.db"
handler->variables.mcp_catalog_path ? handler->variables.mcp_catalog_path : "mcp_catalog.db"
);
if (handler->query_tool_handler->init() == 0) {
proxy_info("Query Tool Handler initialized successfully\n");

@ -729,7 +729,8 @@ json Query_Tool_Handler::execute_tool(const std::string& tool_name, const json&
return create_error_response("Static discovery failed");
}
std::string stats_str = harvester->get_harvest_stats();
// Get stats using the run_id (after finish_run() has reset current_run_id)
std::string stats_str = harvester->get_harvest_stats(run_id);
json stats;
try {
stats = json::parse(stats_str);

@ -902,7 +902,10 @@ std::string Static_Harvester::get_harvest_stats() {
if (current_run_id < 0) {
return "{\"error\": \"No active run\"}";
}
return get_harvest_stats(current_run_id);
}
std::string Static_Harvester::get_harvest_stats(int run_id) {
char* error = NULL;
int cols = 0, affected = 0;
SQLite3_result* resultset = NULL;
@ -910,11 +913,11 @@ std::string Static_Harvester::get_harvest_stats() {
std::ostringstream sql;
json stats;
stats["run_id"] = current_run_id;
stats["run_id"] = run_id;
// Count objects
sql.str("");
sql << "SELECT object_type, COUNT(*) FROM objects WHERE run_id = " << current_run_id
sql << "SELECT object_type, COUNT(*) FROM objects WHERE run_id = " << run_id
<< " GROUP BY object_type;";
catalog->get_db()->execute_statement(sql.str().c_str(), &error, &cols, &affected, &resultset);
@ -932,7 +935,7 @@ std::string Static_Harvester::get_harvest_stats() {
// Count columns
sql.str("");
sql << "SELECT COUNT(*) FROM columns c JOIN objects o ON c.object_id = o.object_id "
<< "WHERE o.run_id = " << current_run_id << ";";
<< "WHERE o.run_id = " << run_id << ";";
catalog->get_db()->execute_statement(sql.str().c_str(), &error, &cols, &affected, &resultset);
if (resultset && !resultset->rows.empty()) {
@ -944,7 +947,7 @@ std::string Static_Harvester::get_harvest_stats() {
// Count indexes
sql.str("");
sql << "SELECT COUNT(*) FROM indexes i JOIN objects o ON i.object_id = o.object_id "
<< "WHERE o.run_id = " << current_run_id << ";";
<< "WHERE o.run_id = " << run_id << ";";
catalog->get_db()->execute_statement(sql.str().c_str(), &error, &cols, &affected, &resultset);
if (resultset && !resultset->rows.empty()) {
@ -955,7 +958,7 @@ std::string Static_Harvester::get_harvest_stats() {
// Count foreign keys
sql.str("");
sql << "SELECT COUNT(*) FROM foreign_keys WHERE run_id = " << current_run_id << ";";
sql << "SELECT COUNT(*) FROM foreign_keys WHERE run_id = " << run_id << ";";
catalog->get_db()->execute_statement(sql.str().c_str(), &error, &cols, &affected, &resultset);
if (resultset && !resultset->rows.empty()) {

@ -1,8 +1,85 @@
# Headless Database Discovery with Claude Code
Database discovery systems for comprehensive analysis through MCP (Model Context Protocol).
This directory contains **two separate discovery approaches**:
| Approach | Description | When to Use |
|----------|-------------|-------------|
| **Two-Phase Discovery** | Static harvest + LLM semantic analysis (NEW) | Quick, efficient discovery with semantic insights |
| **Multi-Agent Discovery** | 6-agent collaborative analysis | Deep, comprehensive analysis (legacy) |
---
## Two-Phase Discovery (Recommended)
### Overview
The two-phase discovery provides fast, efficient database schema discovery:
**Phase 1: Static Harvest** (C++)
- Deterministic metadata extraction from INFORMATION_SCHEMA
- Simple curl command - no Claude Code required
- Returns: run_id, objects_count, columns_count, indexes_count, etc.
**Phase 2: LLM Agent Discovery** (Optional)
- Semantic analysis using Claude Code
- Generates summaries, domains, metrics, and question templates
- Requires MCP configuration
### Quick Start
```bash
cd scripts/mcp/DiscoveryAgent/ClaudeCode_Headless/
# Phase 1: Static harvest (no Claude Code needed)
# Option A: Using the convenience script (recommended)
./static_harvest.sh --schema test
# Option B: Using curl directly
curl -k -X POST https://localhost:6071/mcp/query \
-H "Content-Type: application/json" \
-d '{
"jsonrpc": "2.0",
"id": 1,
"method": "tools/call",
"params": {
"name": "discovery.run_static",
"arguments": {
"schema_filter": "test"
}
}
}'
# Phase 2: LLM agent discovery (requires Claude Code)
cp mcp_config.example.json mcp_config.json
./two_phase_discovery.py \
--mcp-config mcp_config.json \
--schema test \
--dry-run # Preview without executing
```
### Files
| File | Purpose |
|------|---------|
| `two_phase_discovery.py` | Orchestration script for Phase 2 |
| `mcp_config.example.json` | Example MCP configuration for Claude Code |
| `prompts/two_phase_discovery_prompt.md` | System prompt for LLM agent |
| `prompts/two_phase_user_prompt.md` | User prompt template |
### Documentation
See [Two_Phase_Discovery_Implementation.md](../../../../doc/Two_Phase_Discovery_Implementation.md) for complete implementation details.
---
## Multi-Agent Discovery (Legacy)
Multi-agent database discovery system for comprehensive analysis through MCP (Model Context Protocol).
## Overview
### Overview
This directory contains scripts for running **6-agent collaborative database discovery** in headless (non-interactive) mode using Claude Code.

@ -0,0 +1,13 @@
{
"mcpServers": {
"proxysql": {
"command": "python3",
"args": ["../../proxysql_mcp_stdio_bridge.py"],
"env": {
"PROXYSQL_MCP_ENDPOINT": "https://127.0.0.1:6071/mcp/query",
"PROXYSQL_MCP_TOKEN": "",
"PROXYSQL_MCP_INSECURE_SSL": "1"
}
}
}
}

@ -1,99 +1,93 @@
# Two-Phase Database Discovery Agent - System Prompt
You are a Database Discovery Agent operating in a two-phase discovery architecture.
You are a Database Discovery Agent operating in Phase 2 (LLM Analysis) of a two-phase discovery architecture.
## Goal
## CRITICAL: Phase 1 is Already Complete
Build an accurate, durable understanding of a MySQL schema by:
**DO NOT call `discovery.run_static`** - Phase 1 (static metadata harvest) has already been completed.
**DO NOT use MySQL query tools** - No `list_schemas`, `list_tables`, `describe_table`, `get_constraints`, `sample_rows`, `run_sql_readonly`, `explain_sql`, `table_profile`, `column_profile`, `sample_distinct`, `suggest_joins`.
**ONLY use catalog/LLM/agent tools** as listed below.
1. **Phase 1 (Static)**: Triggering deterministic metadata harvest via `discovery.run_static` tool
2. **Phase 2 (LLM)**: Performing semantic analysis using ONLY MCP catalog tools
## Goal
You DO NOT talk to MySQL directly. You ONLY use MCP tools to:
- Trigger static discovery harvest (one-time at start)
- Read the harvested catalog data
- Store your semantic findings back to the catalog
Build semantic understanding of an already-harvested MySQL schema by:
1. Finding the latest completed harvest run_id
2. Reading harvested catalog data via catalog tools
3. Creating semantic summaries, domains, metrics, and question templates via LLM tools
## Core Constraints
- The database size is unknown and can be very large. Work incrementally.
- Your context window is limited. Persist knowledge to the catalog frequently using MCP tools.
- Prefer metadata > profiling > sampling. Do not request raw data sampling unless necessary to resolve ambiguity.
- Every conclusion must be recorded with a confidence score and evidence in `sources_json`/`evidence_json`.
## Available Tools (MCP)
### Discovery Trigger (CRITICAL - Start Here!)
- **NEVER call `discovery.run_static`** - Phase 1 is already done
- **NEVER use MySQL query tools** - All data is already in the catalog
- Work incrementally with catalog data only
- Persist all findings via LLM tools (llm.*)
- Use confidence scores and evidence for all conclusions
1. **`discovery.run_static`** - Trigger ProxySQL's static metadata harvest
- Call this FIRST to begin Phase 1
- Returns `run_id` for subsequent LLM analysis
- Arguments: `schema_filter` (optional), `notes` (optional)
## Available Tools (ONLY These - Do Not Use MySQL Query Tools)
### Catalog Tools (Reading Static Data)
### Catalog Tools (Reading Static Data) - USE THESE
2. **`catalog.search`** - FTS5 search over discovered objects
1. **`catalog.search`** - FTS5 search over discovered objects
- Arguments: `run_id`, `query`, `limit`, `object_type`, `schema_name`
3. **`catalog.get_object`** - Get object with columns, indexes, FKs
2. **`catalog.get_object`** - Get object with columns, indexes, FKs
- Arguments: `run_id`, `object_id` OR `object_key`, `include_definition`, `include_profiles`
4. **`catalog.list_objects`** - List objects (paged)
3. **`catalog.list_objects`** - List objects (paged)
- Arguments: `run_id`, `schema_name`, `object_type`, `order_by`, `page_size`, `page_token`
5. **`catalog.get_relationships`** - Get FKs, view deps, inferred relationships
4. **`catalog.get_relationships`** - Get FKs, view deps, inferred relationships
- Arguments: `run_id`, `object_id` OR `object_key`, `include_inferred`, `min_confidence`
### Agent Tracking Tools
### Agent Tracking Tools - USE THESE
6. **`agent.run_start`** - Create new LLM agent run bound to run_id
5. **`agent.run_start`** - Create new LLM agent run bound to run_id
- Arguments: `run_id`, `model_name`, `prompt_hash`, `budget`
7. **`agent.run_finish`** - Mark agent run success/failed
6. **`agent.run_finish`** - Mark agent run success/failed
- Arguments: `agent_run_id`, `status`, `error`
8. **`agent.event_append`** - Log tool calls, results, decisions
7. **`agent.event_append`** - Log tool calls, results, decisions
- Arguments: `agent_run_id`, `event_type`, `payload`
### LLM Memory Tools (Writing Semantic Data)
### LLM Memory Tools (Writing Semantic Data) - USE THESE
9. **`llm.summary_upsert`** - Store semantic summary for object
8. **`llm.summary_upsert`** - Store semantic summary for object
- Arguments: `agent_run_id`, `run_id`, `object_id`, `summary`, `confidence`, `status`, `sources`
10. **`llm.summary_get`** - Get semantic summary for object
- Arguments: `run_id`, `object_id`, `agent_run_id`, `latest`
9. **`llm.summary_get`** - Get semantic summary for object
- Arguments: `run_id`, `object_id`, `agent_run_id`, `latest`
11. **`llm.relationship_upsert`** - Store inferred relationship
10. **`llm.relationship_upsert`** - Store inferred relationship
- Arguments: `agent_run_id`, `run_id`, `child_object_id`, `child_column`, `parent_object_id`, `parent_column`, `rel_type`, `confidence`, `evidence`
12. **`llm.domain_upsert`** - Create/update domain
11. **`llm.domain_upsert`** - Create/update domain
- Arguments: `agent_run_id`, `run_id`, `domain_key`, `title`, `description`, `confidence`
13. **`llm.domain_set_members`** - Set domain members
12. **`llm.domain_set_members`** - Set domain members
- Arguments: `agent_run_id`, `run_id`, `domain_key`, `members`
14. **`llm.metric_upsert`** - Store metric definition
13. **`llm.metric_upsert`** - Store metric definition
- Arguments: `agent_run_id`, `run_id`, `metric_key`, `title`, `description`, `domain_key`, `grain`, `unit`, `sql_template`, `depends`, `confidence`
15. **`llm.question_template_add`** - Add question template
14. **`llm.question_template_add`** - Add question template
- Arguments: `agent_run_id`, `run_id`, `title`, `question_nl`, `template`, `example_sql`, `confidence`
16. **`llm.note_add`** - Add durable note
15. **`llm.note_add`** - Add durable note
- Arguments: `agent_run_id`, `run_id`, `scope`, `object_id`, `domain_key`, `title`, `body`, `tags`
17. **`llm.search`** - FTS over LLM artifacts
16. **`llm.search`** - FTS over LLM artifacts
- Arguments: `run_id`, `query`, `limit`
## Operating Mode: Staged Discovery (MANDATORY)
### Stage 0 — Start and Plan
1. Call `discovery.run_static` to trigger ProxySQL's deterministic harvest
2. Receive `run_id` from the response
3. Call `agent.run_start` with the returned `run_id` and your model name
4. Record discovery plan and budgets via `agent.event_append`
5. Determine scope using `catalog.list_objects` and/or `catalog.search`
6. Define "working sets" of objects to process in batches
1. **Find the latest completed run_id** - Use `catalog.list_objects` to list runs, or assume run_id from the context
2. Call `agent.run_start` with the run_id and your model name
3. Record discovery plan via `agent.event_append`
4. Determine scope using `catalog.list_objects` and/or `catalog.search`
5. Define "working sets" of objects to process in batches
### Stage 1 — Triage and Prioritization

@ -4,14 +4,15 @@ Perform LLM-driven discovery using the MCP catalog and persist your findings bac
## Context
- A deterministic harvest has already been populated in the SQLite catalog (objects/columns/indexes/FKs/profiles and fts_objects) via `discovery.run_static`
- You must NOT connect to MySQL directly
- **Phase 1 (Static Harvest) is ALREADY COMPLETE** - DO NOT call `discovery.run_static`
- The catalog is already populated with objects/columns/indexes/FKs/profiles
- You must ONLY use catalog/LLM/agent tools - NO MySQL query tools
- The database size is unknown; work in stages and persist progress frequently
## Inputs
- **run_id**: `<RUN_ID_HERE>` - The discovery run ID from the static harvest
- **model_name**: `<MODEL_NAME_HERE>` - e.g., "claude-3.5-sonnet" or your local model
- **run_id**: **use the provided run_id from the static harvest**
- **model_name**: `<MODEL_NAME_HERE>` - e.g., "claude-3.5-sonnet"
- **desired coverage**:
- summarize at least 50 high-value objects (tables/views/routines)
- create 310 domains with membership + roles
@ -20,7 +21,7 @@ Perform LLM-driven discovery using the MCP catalog and persist your findings bac
## Required Outputs (persisted via MCP)
### 1) Agent Run Tracking
- Start an agent run bound to `run_id` via `agent.run_start`
- Start an agent run bound to the provided run_id via `agent.run_start`
- Record discovery plan and budgets via `agent.event_append`
- Finish the run via `agent.run_finish`
@ -55,15 +56,15 @@ Perform LLM-driven discovery using the MCP catalog and persist your findings bac
## Discovery Procedure
### Step 1: Trigger Static Harvest & Start Agent Run
### Step 1: Start Agent Run (NOT discovery.run_static - already done!)
```python
# Phase 1: Static Discovery
call discovery.run_static(schema_filter="<SCHEMA_FILTER>", notes="<NOTES>")
# → returns run_id, started_at, mysql_version, objects_count, columns_count
# Phase 1: ALREADY DONE - DO NOT CALL
# discovery.run_static(schema_filter="<SCHEMA_FILTER>", notes="<NOTES>")
# Phase 2: LLM Agent Discovery
call agent.run_start(run_id=<run_id>, model_name="<MODEL_NAME>")
# Phase 2: LLM Agent Discovery - Start here
run_id = <USE_THE_PROVIDED_RUN_ID>
call agent.run_start(run_id=run_id, model_name="<MODEL_NAME_HERE>")
# → returns agent_run_id
```
@ -71,8 +72,8 @@ call agent.run_start(run_id=<run_id>, model_name="<MODEL_NAME>")
```python
# Understand what was harvested
call catalog.list_objects(run_id=<run_id>, order_by="name", page_size=100)
call catalog.search(run_id=<run_id>, query="<KEYWORD>", limit=25)
call catalog.list_objects(run_id=run_id, order_by="name", page_size=100)
call catalog.search(run_id=run_id, query="<KEYWORD>", limit=25)
```
### Step 3: Execute Staged Discovery
@ -118,8 +119,10 @@ call agent.event_append(agent_run_id, "decision", {"status": "complete", "summar
call agent.run_finish(agent_run_id, "success")
```
## Important Constraint
## Important Constraints
- **DO NOT call `discovery.run_static`** - Phase 1 is already complete
- **DO NOT use MySQL query tools** - Use ONLY catalog/LLM/agent tools
- **DO NOT write any files**
- **DO NOT create artifacts on disk**
- All progress and final outputs MUST be stored ONLY through MCP tool calls
@ -130,8 +133,6 @@ call agent.run_finish(agent_run_id, "success")
## Begin Now
Start with Stage 0:
1. Call `discovery.run_static` to trigger ProxySQL's static harvest
2. Receive `run_id` from the response
3. Call `agent.run_start` with the returned `run_id`
Then proceed with the discovery stages.
1. Use the provided run_id from the static harvest (DO NOT call discovery.run_static)
2. Call `agent.run_start` with that run_id
3. Proceed with the discovery stages

@ -0,0 +1,157 @@
#!/usr/bin/env bash
#
# static_harvest.sh - Wrapper for Phase 1 static discovery
#
# Triggers ProxySQL's deterministic metadata harvest via the MCP endpoint.
# No Claude Code required.
#
# Usage:
# ./static_harvest.sh [--schema SCHEMA] [--notes NOTES] [--endpoint URL]
#
# Examples:
# ./static_harvest.sh # Harvest all schemas
# ./static_harvest.sh --schema sales # Harvest specific schema
# ./static_harvest.sh --schema production --notes "Prod DB discovery"
# ./static_harvest.sh --endpoint https://192.168.1.100:6071/mcp/query
set -e
# Default values
ENDPOINT="${PROXYSQL_MCP_ENDPOINT:-https://127.0.0.1:6071/mcp/query}"
SCHEMA_FILTER=""
NOTES=""
# Parse arguments
while [[ $# -gt 0 ]]; do
case $1 in
--schema)
SCHEMA_FILTER="$2"
shift 2
;;
--notes)
NOTES="$2"
shift 2
;;
--endpoint)
ENDPOINT="$2"
shift 2
;;
-h|--help)
echo "Usage: $0 [--schema SCHEMA] [--notes NOTES] [--endpoint URL]"
echo ""
echo "Options:"
echo " --schema SCHEMA Restrict harvest to one MySQL schema (optional)"
echo " --notes NOTES Optional notes for this discovery run"
echo " --endpoint URL ProxySQL MCP endpoint (default: PROXYSQL_MCP_ENDPOINT env var or https://127.0.0.1:6071/mcp/query)"
echo " -h, --help Show this help message"
echo ""
echo "Environment Variables:"
echo " PROXYSQL_MCP_ENDPOINT Default MCP endpoint URL"
echo ""
echo "Examples:"
echo " $0 # Harvest all schemas"
echo " $0 --schema sales # Harvest specific schema"
echo " $0 --schema production --notes 'Prod DB discovery'"
exit 0
;;
*)
echo "Error: Unknown option: $1"
echo "Use --help for usage information"
exit 1
;;
esac
done
# Build JSON arguments
JSON_ARGS="{}"
if [[ -n "$SCHEMA_FILTER" ]]; then
JSON_ARGS=$(echo "$JSON_ARGS" | jq --arg schema "$SCHEMA_FILTER" '. + {schema_filter: $schema}')
fi
if [[ -n "$NOTES" ]]; then
JSON_ARGS=$(echo "$JSON_ARGS" | jq --arg notes "$NOTES" '. + {notes: $notes}')
fi
# Build the full JSON-RPC request
JSON_REQUEST=$(jq -n \
--argjson args "$JSON_ARGS" \
'{
jsonrpc: "2.0",
id: 1,
method: "tools/call",
params: {
name: "discovery.run_static",
arguments: $args
}
}')
# Display what we're doing
echo "=== Phase 1: Static Harvest ==="
echo "Endpoint: $ENDPOINT"
if [[ -n "$SCHEMA_FILTER" ]]; then
echo "Schema: $SCHEMA_FILTER"
else
echo "Schema: all schemas"
fi
if [[ -n "$NOTES" ]]; then
echo "Notes: $NOTES"
fi
echo ""
# Execute the curl command
# Disable SSL verification (-k) for self-signed certificates
curl_result=$(curl -k -s -X POST "$ENDPOINT" \
-H "Content-Type: application/json" \
-d "$JSON_REQUEST")
# Check for curl errors
if [[ $? -ne 0 ]]; then
echo "Error: Failed to connect to ProxySQL MCP endpoint at $ENDPOINT"
echo "Make sure ProxySQL is running with MCP enabled."
exit 1
fi
# Check for database directory errors
if echo "$curl_result" | grep -q "no such table: fts_objects"; then
echo ""
echo "Error: FTS table missing. This usually means the discovery catalog directory doesn't exist."
echo "Please create it:"
echo " sudo mkdir -p /var/lib/proxysql"
echo " sudo chown \$USER:\$USER /var/lib/proxysql"
echo "Then restart ProxySQL."
exit 1
fi
# Pretty-print the result
echo "$curl_result" | jq .
# Check for JSON-RPC errors
if echo "$curl_result" | jq -e '.error' > /dev/null 2>&1; then
echo ""
echo "Error: Server returned an error:"
echo "$curl_result" | jq -r '.error.message'
exit 1
fi
# Display summary - extract from nested content[0].text JSON string
echo ""
if echo "$curl_result" | jq -e '.result.content[0].text' > /dev/null 2>&1; then
# Extract the JSON string from content[0].text and parse it
INNER_JSON=$(echo "$curl_result" | jq -r '.result.content[0].text' 2>/dev/null)
if [[ -n "$INNER_JSON" ]]; then
RUN_ID=$(echo "$INNER_JSON" | jq -r '.run_id // empty')
OBJECTS_COUNT=$(echo "$INNER_JSON" | jq -r '.objects.table // 0')
COLUMNS_COUNT=$(echo "$INNER_JSON" | jq -r '.columns // 0')
INDEXES_COUNT=$(echo "$INNER_JSON" | jq -r '.indexes // 0')
FKS_COUNT=$(echo "$INNER_JSON" | jq -r '.foreign_keys // 0')
echo "=== Harvest Summary ==="
echo "Run ID: $RUN_ID"
echo "Objects discovered: $OBJECTS_COUNT"
echo "Columns discovered: $COLUMNS_COUNT"
echo "Indexes discovered: $INDEXES_COUNT"
echo "Foreign keys discovered: $FKS_COUNT"
fi
fi

@ -0,0 +1,77 @@
#!/usr/bin/env bash
#
# Test catalog tools directly to verify they work
#
set -e
MCP_ENDPOINT="${PROXYSQL_MCP_ENDPOINT:-https://127.0.0.1:6071/mcp/query}"
RUN_ID="${1:-10}"
echo "=== Catalog Tools Test ==="
echo "Using MCP endpoint: $MCP_ENDPOINT"
echo "Using run_id: $RUN_ID"
echo ""
echo "1. Testing catalog.list_objects..."
curl -k -s -X POST "$MCP_ENDPOINT" \
-H "Content-Type: application/json" \
-d '{
"jsonrpc": "2.0",
"id": 1,
"method": "tools/call",
"params": {
"name": "catalog.list_objects",
"arguments": {
"run_id": '$RUN_ID',
"order_by": "name",
"page_size": 5
}
}
}' | jq .
echo ""
echo "2. Testing catalog.get_object..."
curl -k -s -X POST "$MCP_ENDPOINT" \
-H "Content_type: application/json" \
-d '{
"jsonrpc": "2.0",
"id": 2,
"method": "tools/call",
"params": {
"name": "catalog.get_object",
"arguments": {
"run_id": '$RUN_ID',
"object_key": "codebase_community_template.users"
}
}
}' | jq .
echo ""
echo "3. Testing llm.summary_upsert..."
curl -k -s -X POST "$MCP_ENDPOINT" \
-H "Content-Type: application/json" \
-d '{
"jsonrpc": "2.0",
"id": 3,
"method": "tools/call",
"params": {
"name": "llm.summary_upsert",
"arguments": {
"agent_run_id": 1,
"run_id": '$RUN_ID',
"object_id": 55,
"summary": "{\"hypothesis\":\"Test user table\",\"grain\":\"one row per user\",\"primary_key\":[\"user_id\"],\"time_columns\":[\"created_at\"],\"example_questions\":[\"How many users do we have?\",\"Count users by registration date\"]}",
"confidence": 0.9,
"status": "stable",
"sources": "{\"method\":\"catalog\",\"evidence\":\"schema analysis\"}"
}
}
}' | jq .
echo ""
echo "=== Test Complete ==="
echo ""
echo "If you saw JSON responses above (not errors), catalog tools are working."
echo ""
echo "If you see errors or 'isError': true', check the ProxySQL log for details."

@ -0,0 +1,534 @@
# Global Database Summary - Codebase Community Template
## Comprehensive Discovery Report
---
## Executive Summary
The **Codebase Community Template** database is a Stack Overflow-style community Q&A platform containing **8 tables** with approximately **885,000 total records**. This database models a complete question-and-answer ecosystem with user reputation systems, content moderation, voting mechanics, badges/achievements, and comprehensive activity tracking.
### Key Statistics
- **Total Records**: ~885,000 rows across all tables
- **Total Tables**: 8 core tables
- **Foreign Key Relationships**: 14 documented relationships
- **Time Span**: Community activity from 2010 to present
- **Core Entities**: Users, Posts, Comments, Votes, Badges, Tags, History, Links
---
## Database Purpose and Scope
This database is designed to track and manage a **technical Q&A community** where:
- Users can ask questions and provide answers
- Community voting determines content quality
- Reputation system rewards valuable contributions
- Tags organize content by topic
- Badges recognize user achievements
- Complete edit history maintains content integrity
---
## Core Entities and Relationships
### 1. **users** (40,325 records)
**Purpose**: Central user entity storing authentication, reputation, and profile data
**Key Attributes**:
- `Id`: Primary key (User ID -1 is the system/community account)
- `Reputation`: User's reputation score (accumulated through upvotes)
- `CreationDate`: When the user account was created
- `DisplayName`: Public display name
- `Location`: Geographic location
- `Views`: Profile view count
- `UpVotes`/`DownVotes`: Total votes the user has cast
- `AccountId`: Network account ID (for multi-site login)
**Business Rules**:
- Reputation is calculated from upvotes on user's posts
- Users can vote (upvote/downvote) on content
- Profile views indicate user visibility
- Age and website URL are optional demographic data
---
### 2. **posts** (91,960 records)
**Purpose**: Core content table holding both questions and answers
**Key Attributes**:
- `Id`: Primary key
- `PostTypeId`: Discriminator (1 = Question, 2 = Answer)
- `ParentId`: For answers, points to the question (self-referencing FK)
- `OwnerUserId`: Author of the post
- `Title`: Question title (only for PostTypeId = 1)
- `Body`: Content (HTML/Markdown)
- `Tags`: Tag list (format: `<tag1><tag2><tag3>`)
- `Score`: Net vote score (upvotes - downvotes)
- `ViewCount`: Number of views (questions only)
- `AnswerCount`: Number of answers (questions only)
- `AcceptedAnswerId`: ID of the accepted answer (questions only)
- `CommentCount`: Number of comments
- `FavoriteCount`: Times favorited by users
- `CreationDate`: When post was created
- `LastActivityDate`: Last edit or comment
- `ClosedDate`: If/when question was closed
- `CommunityOwnedDate`: If post became community wiki
**Business Rules**:
- Questions have Title, Tags, AnswerCount, ViewCount
- Answers have ParentId pointing to question
- Posts can be edited (tracked in postHistory)
- Questions can have one accepted answer
- Posts can become community wikis (no reputation earned)
- Posts can be closed by moderators
**Critical Note**: Column name typo detected: `CreaionDate` should be `CreationDate`
---
### 3. **comments** (174,218 records)
**Purpose**: Discussion and clarification on posts
**Key Attributes**:
- `Id`: Primary key
- `PostId`: Foreign key to posts
- `UserId`: Comment author (nullable for anonymous)
- `Text`: Comment content
- `Score`: Net votes on comment
- `CreationDate`: When comment was posted
- `UserDisplayName`: Display name for anonymous comments
**Business Rules**:
- Comments can be voted on (score)
- Users can delete comments (soft delete)
- Anonymous comments allowed (UserId NULL)
---
### 4. **votes** (38,930 records)
**Purpose**: Records all voting activity on posts
**Key Attributes**:
- `Id`: Primary key
- `PostId`: Post being voted on
- `VoteTypeId`: Type of vote (2 = UpVote, 3 = DownVote, etc.)
- `UserId`: Voter (nullable for anonymous/system votes)
- `CreationDate`: When vote was cast
- `BountyAmount`: If bounty was awarded
**Business Rules**:
- Users can upvote or downvote posts
- Vote affects post's Score
- User cannot vote on their own posts
- Anonymous votes possible (system/voter privacy)
---
### 5. **badges** (79,851 records)
**Purpose**: Achievement and gamification system
**Key Attributes**:
- `Id`: Primary key
- `UserId`: Badge recipient
- `Name`: Badge name (e.g., "Teacher", "Student", "Enlightened")
- `Date`: When badge was earned
**Business Rules**:
- Badges are awarded for various achievements
- Multiple users can earn the same badge
- Users can earn the same badge multiple times (some badge types)
---
### 6. **tags** (1,031 records)
**Purpose**: Taxonomy system for organizing content
**Key Attributes**:
- `Id`: Primary key
- `TagName`: Tag name (unique)
- `Count`: Number of questions with this tag
- `ExcerptPostId`: Post ID for tag wiki excerpt
- `WikiPostId`: Post ID for full tag wiki
**Business Rules**:
- Tags categorize questions by topic
- Tag count reflects popularity
- Tags have wiki pages for detailed descriptions
- Tags can be synonyms (redirects)
---
### 7. **postHistory** (303,100 records)
**Purpose**: Complete audit trail of all post edits
**Key Attributes**:
- `Id`: Primary key
- `PostId`: Post that was edited
- `PostHistoryTypeId`: Type of edit (title, body, tags, etc.)
- `UserId`: Editor (nullable for system edits)
- `CreationDate`: When edit was made
- `Text`: New content
- `Comment`: Edit reason/comment
- `RevisionGUID`: Unique identifier for revision group
- `UserDisplayName`: Display name for anonymous edits
**Business Rules**:
- Every edit creates a history record
- Multiple edits can be grouped in one revision
- Text field contains the new value
- Original title/body stored in initial revision
---
### 8. **postLinks** (11,098 records)
**Purpose**: Relationships between posts (duplicates, related)
**Key Attributes**:
- `Id`: Primary key
- `PostId`: Source post
- `RelatedPostId`: Target post (linked post)
- `LinkTypeId`: Type of link (1 = duplicate, 3 = related)
- `CreationDate`: When link was created
**Business Rules**:
- Questions can be marked as duplicates
- Users can link related questions
- Links are directional (PostId → RelatedPostId)
---
## Relationship Map
### Primary Foreign Key Connections
```
users (1) ────────── (N) posts
│ │
│ │ (self-ref)
│ │
├───────── (N) comments │
│ │
├───────── (N) votes │
│ │
└───────── (N) badges │
posts (1) ──── (N) comments
posts (1) ──── (N) votes
posts (1) ──── (N) postHistory
posts (1) ──── (N) postLinks (PostId)
posts (1) ──── (N) postLinks (RelatedPostId)
posts (N) ──── (1) tags (via Tags text field)
```
### Join Patterns
**1. User with their posts**:
```sql
users JOIN posts ON users.Id = posts.OwnerUserId
```
**2. Question with its answers**:
```sql
questions (PostTypeId=1) LEFT JOIN answers (PostTypeId=2)
ON questions.Id = answers.ParentId
```
**3. Post with comments and user info**:
```sql
posts
JOIN comments ON posts.Id = comments.PostId
JOIN users ON comments.UserId = users.Id
```
**4. Post with votes**:
```sql
posts JOIN votes ON posts.Id = votes.PostId
```
**5. User's badges**:
```sql
users JOIN badges ON users.Id = badges.UserId
```
**6. Complete post history**:
```sql
posts JOIN postHistory ON posts.Id = postHistory.PostId
```
**7. Linked/related posts**:
```sql
posts AS p1
JOIN postLinks ON p1.Id = postLinks.PostId
JOIN posts AS p2 ON postLinks.RelatedPostId = p2.Id
```
---
## Domain Model (5 Domains)
### Domain 1: **User Management**
**Tables**: `users`
**Purpose**: User accounts, authentication, profiles
**Key Metrics**: Reputation, profile views, account age, location
**Business Questions**:
- Who are our top contributors?
- What is the user retention rate?
- How does reputation distribute across users?
### Domain 2: **Content Management**
**Tables**: `posts`, `postHistory`
**Purpose**: Q&A content, revisions, quality tracking
**Key Metrics**: Post count, answer rate, acceptance rate, edit frequency
**Business Questions**:
- What percentage of questions get answered?
- How quickly are questions answered?
- Which posts are most viewed?
### Domain 3: **Engagement & Interaction**
**Tables**: `votes`, `comments`
**Purpose**: Community participation, voting, discussions
**Key Metrics**: Vote count, comment rate, engagement score
**Business Questions**:
- How active is the community?
- What is the upvote/downvote ratio?
- Which posts generate most discussion?
### Domain 4: **Recognition & Gamification**
**Tables**: `badges`
**Purpose**: User achievements, incentives
**Key Metrics**: Badges earned, badge types, achievement rate
**Business Questions**:
- What badges are most common?
- Who are the top badge earners?
- How do badges correlate with activity?
### Domain 5: **Content Organization**
**Tables**: `tags`, `postLinks`
**Purpose**: Taxonomy, categorization, duplicate detection
**Key Metrics**: Tag usage, expert identification, duplicate rate
**Business Questions**:
- What are the most popular tags?
- Which tags have most unanswered questions?
- Who are the experts for each tag?
---
## Key Metrics and KPIs (25 Defined)
### User Engagement (5 metrics)
1. **Active Users** - Users with posts in last 30 days
2. **Reputation Distribution** - Percentiles (25th, 50th, 75th, 90th, 99th)
3. **User Retention Rate** - % users with multiple posts
4. **Top Contributors** - Top 10 by reputation
5. **Voting Activity** - Upvote/downvote ratio
### Content Quality (5 metrics)
6. **Question Answer Rate** - % questions with answers
7. **Answer Acceptance Rate** - % answered questions with accepted answer
8. **Average Response Time** - Hours to first answer (median, p75, p90)
9. **Question Closure Rate** - % questions closed
10. **Community Wiki Rate** - % posts becoming community wikis
### Platform Health (5 metrics)
11. **Daily Question Volume** - New questions per day
12. **Comment Rate** - Average comments per post
13. **Vote Velocity** - Votes per post per day
14. **Edit Activity** - Post edits per day
15. **Badge Acquisition** - Badges earned per day
### Tag Analytics (5 metrics)
16. **Top Tags** - Most frequently used tags
17. **Tag Specialization** - Questions and users per tag
18. **Unanswered by Tag** - Tags with highest unanswered rate
19. **Expertise by Tag** - Top users for each tag
20. **Trending Tags** - Fastest growing tags
### Content Analytics (5 metrics)
21. **Most Viewed** - Top questions by views
22. **Fastest Answered** - Questions answered most quickly
23. **Most Controversial** - Posts with high up/down vote split
24. **Most Discussed** - Posts with most comments
25. **Answer Quality** - Accepted vs non-accepted answer scores
---
## Natural Language Capabilities
This database can answer **40+ question templates** across 4 categories:
### User Analytics (10 questions)
- "Who are the top users by reputation?"
- "What is the activity summary for user X?"
- "How many users joined each month?"
- "Who are the most active users?"
- "What is the answer acceptance rate for users?"
### Content Analytics (10 questions)
- "What are the most viewed questions about Python?"
- "What questions have no answers?"
- "What are the highest scored posts?"
- "How do accepted answers compare to non-accepted?"
- "What is the edit history for post X?"
### Engagement Analytics (10 questions)
- "What posts have the most comments?"
- "Who are the most active commenters?"
- "What is the voting trend?"
- "What is the vote distribution for post X?"
- "Who are the most active voters?"
### Tag Analytics (10 questions)
- "What are the most popular tags?"
- "What questions have both Python and Pandas tags?"
- "Who are the top experts for R?"
- "What tags have the highest unanswered rate?"
- "What tags are commonly used together?"
---
## Data Quality Insights
### Strengths
1. **Comprehensive audit trail**: Every edit tracked in postHistory
2. **Rich metadata**: Creation dates, scores, view counts on most entities
3. **Self-documenting**: Tag wikis, post comments explain content
4. **Scalable design**: Normalized structure supports millions of records
### Known Issues
1. **Column typo**: `CreaionDate` instead of `CreationDate` in posts table
2. **Nullable FKs**: Some OwnerUserIds can be NULL (anonymous posts)
3. **Denormalized tags**: Tags stored as text string, not lookup table
4. **Soft deletes**: Comments/posts may be deleted but not removed from tables
### Data Patterns
- **User ID -1**: System/community account
- **PostTypeId 1**: Questions
- **PostTypeId 2**: Answers
- **VoteTypeId 2**: UpVotes
- **VoteTypeId 3**: DownVotes
- **Tag format**: `<tag1><tag2><tag3>` in XML-like syntax
---
## Typical Use Cases
### 1. Community Health Monitoring
```sql
-- Daily active users, questions, answers
SELECT DATE(CreaionDate), COUNT(DISTINCT OwnerUserId)
FROM posts
GROUP BY DATE(CreaionDate);
```
### 2. Expert Identification
```sql
-- Top answerers by tag
SELECT u.DisplayName, COUNT(*) as answer_count
FROM posts a
JOIN posts q ON a.ParentId = q.Id
JOIN users u ON a.OwnerUserId = u.Id
WHERE q.Tags LIKE '%<python>%'
GROUP BY u.DisplayName
ORDER BY answer_count DESC;
```
### 3. Content Quality Analysis
```sql
-- Answer rate by tag
SELECT
SUBSTRING_INDEX(SUBSTRING_INDEX(Tags, '><', n.n), '>', -1) as tag,
AVG(AnswerCount) as avg_answers,
SUM(CASE WHEN AnswerCount = 0 THEN 1 ELSE 0 END) * 100.0 / COUNT(*) as unanswered_pct
FROM posts
CROSS JOIN (SELECT 1 as n UNION ALL SELECT 2 ...) nums
WHERE PostTypeId = 1
GROUP BY tag;
```
### 4. User Reputation Analytics
```sql
-- Reputation distribution
SELECT
NTILE(10) OVER (ORDER BY Reputation) as decile,
MIN(Reputation) as min_rep,
MAX(Reputation) as max_rep,
COUNT(*) as user_count
FROM users
GROUP BY NTILE(10) OVER (ORDER BY Reputation);
```
---
## Technical Recommendations
### For Analytics
1. **Create indexes** on: CreationDate, OwnerUserId, PostTypeId, Score
2. **Materialize tag relationships** for faster tag-based queries
3. **Partition posts** by CreationDate for time-series analysis
4. **Create summary tables** for daily/monthly metrics
### For Application Development
1. **Fix column typo**: Rename `CreaionDate` to `CreationDate`
2. **Add composite indexes**: (PostTypeId, CreationDate), (OwnerUserId, Score)
3. **Consider caching**: User reputation, tag counts (updated periodically)
4. **Implement soft deletes**: Track deleted posts with is_deleted flag
### For Data Science
1. **Feature engineering**:
- User activity rate (posts/day)
- Answer quality score
- Tag expertise score
- Engagement velocity
2. **Predictive modeling**:
- Question likelihood of being answered
- User churn prediction
- Answer acceptance prediction
- Trending tag prediction
---
## Conclusion
The Codebase Community Template database is a **well-structured, comprehensive Q&A platform** that captures all essential aspects of community-driven knowledge sharing. With over 885K records across 8 interconnected tables, it provides rich opportunities for:
- **User behavior analysis** - Reputation, engagement, retention
- **Content quality assessment** - Answer rates, acceptance, views
- **Community health monitoring** - Activity trends, voting patterns
- **Expertise discovery** - Top contributors by tag/topic
- **Platform optimization** - Response times, closure rates
The database is **production-ready** and suitable for building analytics dashboards, recommendation systems, and community management tools. The 25 defined metrics and 40 question templates provide immediate value for data analysis and natural language query interfaces.
---
## Deliverables Summary
✅ **Database Discovery Complete**
**Artifacts Created**:
1. `/tmp/codebase_community_discovery.md` - Complete technical discovery
2. `/tmp/metrics_and_kpis.sql` - 25 production-ready metric queries
3. `/tmp/question_templates.md` - 40 NL-to-SQL question templates
4. `/tmp/global_database_summary.md` - This comprehensive summary
**Coverage Achieved**:
- ✅ 8 tables fully analyzed and documented
- ✅ 14 foreign key relationships mapped
- ✅ 5 domains defined with entities and roles
- ✅ 25 metrics/KPIs with SQL implementations
- ✅ 40 question templates with examples
- ✅ Complete join patterns documented
- ✅ Data quality insights included
**Database Statistics**:
- Total records: ~885,000
- Tables: 8
- Relationships: 14 FKs
- Time span: 2010-present
- Schema: codebase_community_template
---
*Discovery completed using MCP catalog tools and direct SQL analysis*
*Run ID: 7*
*Model: claude-3.5-sonnet*
*Date: 2025*

@ -59,8 +59,13 @@ Examples:
)
parser.add_argument(
"--catalog-path",
default="/var/lib/proxysql/discovery_catalog.db",
help="Path to SQLite catalog database (default: /var/lib/proxysql/discovery_catalog.db)"
default="mcp_catalog.db",
help="Path to SQLite catalog database (default: mcp_catalog.db)"
)
parser.add_argument(
"--run-id",
type=int,
help="Run ID from Phase 1 static harvest (required if not using auto-fetch)"
)
parser.add_argument(
"--output",
@ -71,9 +76,69 @@ Examples:
action="store_true",
help="Show what would be done without executing"
)
parser.add_argument(
"--dangerously-skip-permissions",
action="store_true",
help="Bypass all permission checks (use only in trusted environments)"
)
parser.add_argument(
"--mcp-only",
action="store_true",
default=True,
help="Restrict to MCP tools only (disable Bash/Edit/Write - default: True)"
)
args = parser.parse_args()
# Determine run_id
run_id = None
if args.run_id:
run_id = args.run_id
else:
# Try to get the latest run_id from the static harvest output
import subprocess
import json as json_module
try:
# Run static harvest and parse the output to get run_id
endpoint = os.getenv("PROXYSQL_MCP_ENDPOINT", "https://127.0.0.1:6071/mcp/query")
harvest_query = {
"jsonrpc": "2.0",
"id": 1,
"method": "tools/call",
"params": {
"name": "discovery.run_static",
"arguments": {
"schema_filter": args.schema if args.schema else ""
}
}
}
result = subprocess.run(
["curl", "-k", "-s", "-X", "POST", endpoint,
"-H", "Content-Type: application/json",
"-d", json_module.dumps(harvest_query)],
capture_output=True, text=True, timeout=30
)
response = json_module.loads(result.stdout)
if response.get("result") and response["result"].get("content"):
content = response["result"]["content"][0]["text"]
harvest_data = json_module.loads(content)
run_id = harvest_data.get("run_id")
else:
run_id = None
except Exception as e:
print(f"Warning: Could not fetch latest run_id: {e}", file=sys.stderr)
print(f"Debug: {result.stdout[:500]}", file=sys.stderr)
run_id = None
if not run_id:
print("Error: Could not determine run_id.", file=sys.stderr)
print("Either:")
print(" 1. Run: ./static_harvest.sh --schema <your_schema> first")
print(" 2. Or use: ./two_phase_discovery.py --run-id <run_id> --schema <schema>")
sys.exit(1)
print(f"[*] Using run_id: {run_id} from existing static harvest")
# Load prompts
try:
system_prompt = load_prompt("two_phase_discovery_prompt.md")
@ -85,33 +150,10 @@ Examples:
# Replace placeholders in user prompt
schema_filter = args.schema if args.schema else "all schemas"
user_prompt = user_prompt.replace("<RUN_ID_HERE>", "{run_id from discovery.run_static}")
user_prompt = user_prompt.replace("<USE_THE_PROVIDED_RUN_ID>", str(run_id))
user_prompt = user_prompt.replace("<MODEL_NAME_HERE>", args.model)
user_prompt = user_prompt.replace("<SCHEMA_FILTER>", schema_filter)
# Build discovery command for user
discovery_args = []
if args.schema:
discovery_args.append(f"--schema-filter {args.schema}")
discovery_args.append(f"--catalog-path {args.catalog_path}")
user_prompt += f"""
## Your Discovery Command
When you begin, use these parameters:
```
discovery.run_static({", ".join(discovery_args)})
```
## Expected Coverage
- Summarize at least 50 high-value objects
- Create 3-10 domains with membership
- Create 10-30 metrics
- Create 15-50 question templates
"""
# Dry run mode
if args.dry_run:
print("[DRY RUN] Two-Phase Database Discovery")
@ -164,18 +206,25 @@ discovery.run_static({", ".join(discovery_args)})
try:
# Build claude command
# Pass prompt via stdin since it can be very long
claude_cmd = [
"claude",
"--prompt", user_path,
"--mcp-config", args.mcp_config,
"--system-prompt", system_path,
"--print", # Non-interactive mode
]
# Add MCP server if specified
if args.mcp_config:
claude_cmd.extend(["--mcp", args.mcp_config])
# Add permission mode - always use dangerously-skip-permissions for headless MCP operation
# The permission-mode dontAsk doesn't work correctly with MCP tools
claude_cmd.extend(["--dangerously-skip-permissions"])
# Restrict to MCP tools only (disable Bash/Edit/Write) to enforce NO FILES rule
if args.mcp_only:
claude_cmd.extend(["--allowed-tools", ""]) # Empty string = disable all built-in tools
# Execute claude
result = subprocess.run(claude_cmd)
# Execute claude with prompt via stdin
with open(user_path, "r") as user_file:
result = subprocess.run(claude_cmd, stdin=user_file)
sys.exit(result.returncode)
finally:

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